Publications
Publications
| 2024 | |
| Kumar, N., Sharma, S., & Kaushal, PS., Cryo-EM structure of the mycobacterial 70S ribosome in complex with ribosomes hibernation promotion factor RafH (2024), Nat Commun 15(1):638.* |  |
| Srinivasan, K., Banerjee, A., & Sengupta, J., Cryo-EM structures reveal the molecular mechanism of HflX-mediated erythromycin resistance in mycobacteria (2024), Structure, 32(9):1443-1453.e4.* |  |
| Yadav, S & Vinotkumar, KR., Factors affecting macromolecule orientations in thin films formed in cryo-EM (2024), Acta Cryst. D80, 535-550. |  |
| Premageetha, GT; Vinothkumar, KR., Bose, S., Exploring Advances in Single Particle CryoEM with Apoferritin: from Blobs to True Atomic Resolution (2024), Int J Biochem Cell Biol.169, 106536. |  |
| Hussain, N., Apotikar, A., Shabareesh, P., Mukherjee, S., Burada, AP., Sikdar, SK., Vinothkumar, KR., Penmatsa, A. Structural insights into pore dynamics of human Pannexin isoforms (2024), Nat Commun. 15, 2942.* |  |
| Mishra, R,K., Sharma, P., Khaja, FT., Uday, AB., Hussain, T., Cryo-EM structure of wheat ribosome reveals unique features of the plant ribosomes (2024), Structure. 32(5):562-574.e3.* |  |
| Jha, S., Bose, S., Vinothkumar KR. Modeling Ligands into Maps Derived from Electron Cryomicroscopy. (2024), J Vis Exp. Jul 19;209. |  |
| Goyal, P., Dhanabalan, KV., Scalise, Maria Francesca., Friemann, Rosmarie., Indiveri, Cesare., Dobson, Renwick CJ Vinothkumar, K.R., Subramanian, Ramaswamy. Molecular determinants of Neu5Ac binding to a tripartite ATP independent periplasmic (TRAP) transporter. (2024), eLife13:RP98158 |  |
| 2023 | |
| Ahmad, M., Jha, B., Tiwari, S., Dwivedi, A., Pal, R., Bose, S., Parish, T., Vinothkumar, KR., Biswal, BK. Crystal and CryoEM structures of Mycobacterium enolase provide insights into 2-phosphoglycerate binding and catalysis (2023), IUcrJ:10: 738-753. |  |
| Srinivasachari, S., Tiwari, VR., Kharbanda, T., Sowdhamini, R., Subramanian, R. A dimer between monomers and hexamers-oligomeric variations in glucosamine-6-phosphate deaminsae family (2023), PLoS One 18(1): e0271654. |  |
| Bangera M, Dungdung A, Prabhu S, Sirajuddin M. Doublet microtubule inner junction protein FAP20 recruits tubulin to the microtubule lattice. (2023), Structure. Dec 7;31(12):1535-1544.e4 | |
| Gautam, S., Mahapa, A., Yeramala, L., Gandhi, A., Krishnan, S., Vinothkumar, KR., Chatterji, D. Regulatory mechanisms of c-di-AMP synthase from Mycobacterium smegmatis revealed by a structure: Function analysis (2023), Prot. Sci. 32:e4568 |  |
| 2022 | |
| Bandyopadhyay, P., Pramanick, I., Biswas, R., Sabarinath, PS., Sreedharan, S., Singh,S., Rajmani, RS., Laxman, S., Dutta, S., Singh, A. (2022), S-adenosyl methionine responsive cystathionine b-synthase modulates sulfurmetabolism and redox balance in Mycobacterium tuberculosis (2022) , Sci .Adv. 8, eabo0097.* |  |
| Arya, CA., Ramanathan, G., Vinothkumar, KR., Subramanian, R. Dimethylformamidase with a unique iron center (2022), Encyclopedia of Inorganic and Bioinorganic Chemistry |
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| Singh, J., Raina, R., Vinothkumar, K.R., Anand, R. Decoding the Mechanism of Specific RNA targeting by ribosomal methyltransferases (2022), ACS Chem Biol.,17(4):829-839. |  |
| Chen, S., Li, J., Vinothkumar, K.R., Henderson, R. Interaction of human erythrocyte catalase with air–water interface in cryoEM (2022), Microscopy, 71(S1), i51-i59. |  |
| Jijumon, AS., Bodakuntla, S., Genova, M., Bangera, M., Sackett, V., Besse, L., Maksut, F., Henriot, V., Magiera, M., Sirajuddin, M., Janke, C. Lysate-based pipeline to characterize microtubule-associated proteins uncovers unique microtubule behaviour (2022), Nat. Cell Biol.24, 253-267. |  |
| 2021 | |
| Nasrallah, C., Cannone, G., Briot, J., Rottier, K., Berizzi, AE., Huang, CY., Quast,RB., Hoh, F., Baneres, JL., Malhaire, F., Berto, L., Dumazer, A., Font-Ingles, J.,Gomes-Santacana, X., Catena, J., Kniazeff, J., Goudet, C., Llebaria, A., Pin, JL., Vinothkumar, K.R., Lebon, G. Agonists and allosteric modulators promote signalling from different metabotropic glutamate receptor 5 conformations (2021), Cell Reports. 36, 109648. |  |
| Vinothkumar, K.R., Expanding capabilities and infrastructure for cryo-EM (2021), Nat. Methods 18, 431-432. | |
| Akbar, S., Bhakta, S., Sengupta, J. Structural insights into the interplay of protein biogenesis factors with the 70s ribosome (2021), Structure 29, 755-767.* | |
| Menon, ND., Kumar, MS., Babu, TG., Bose, S., Vijayakumar, G., Baswe, M., Chatterjee, M., D’Silva, J., Shetty, K., Haripriyan, J., Kumar, A., Nair, S., Somanath, P., Nair, B., Nizet, V., Kumar, G. A Novel N4-like Bacteriophage Isolated from a wastewater Source in South India with activity against several multidrug-resistant clinical Pseudomonas aeruginosa Isolates (2021), msphere 6, e01215-20. * |
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| Vinothkumar, K.R., Arya, CA., Ramanathan, G., Ramaswamy, S. Comparison of CryoEM and X-ray structures of dimethylformamidase (2021), Prog Biophy. Mol Bio. 160:66-78. | |
| 2020 | |
| Arya, CA., Yadav, S., Fine, J., Casanal, A., Chopra, G., Ramanthan, G. Vinothkumar, K.R., Ramaswamy, S. A 2-Tyr-1-Carboxylate Mononuclear Iron Center is the Active Site of Dimethylformamidase (2020), Angew.Chem.Int.Ed.Engl. V59(39):16961-16966. | |
| Kumari, A., Kesarwani, S., Javoor, MG., Vinothkumar, K.R., Sirajuddin, M. Structural insights into actin filament recognition by commonly used cellular actin markers (2020), Embo J. V10:3058. | |
| Burada, AP., Vinnkota, R., Kumar, J. Cryo-EM structure of the ionotropic glutamate receptor GluD1 reveal a non-swapped architecture (2020), Nat. Stru. Mol. Biol. 27, 84-91. * | |
| Burada, AP., Vinnkota, R., Kumar, J. The architecture of GluD2 ionotropic delta glutamate receptor elucidated by cryo-EM (2020), J.Stru.Biol. 107546. * | |
| 2019 | |
| Sathyanarayanan, N., Cannone, G., Gakhar, L., Katagihallimath, N., Sowdhamini, R., Ramaswamy, S., Vinothkumar, K.R., Molecular basis for metabolite channeling in a ring opening enzyme of the phenylacetate degradation pathway (2019), Nat Commun. Sep 11;10(1):4127. | |
| Kumari, J., Vinnakota, R., Kumar J. Structural and Functional Insights into GluK3-kainate Receptor Desensitization and Recovery (2019), Sci.Rep. Jul16;9(1):10254. * | |
(those marked with asterisks are from external users)